C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130411 Srsf6-001 ENSMUSG00000016921 10090 + 2:162931528-162937121 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000130411
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000130411 21.414±9.32 403.551±147.17 24.102±10.39 48.992±34.19 41.499±23.85 39.146±3.54 7.550±2.52 20.868±8.58 31.363±16.07 24.333±2.93 3.077±0.27 132.928±96.82 16.972±8.94 9.279±3.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004E4 CIL_0004E4_0002 CGP 2:161521990-162937121
CIL_00044L CIL_00044L_0002 CGP 2:162931528-162974522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000380 ISS alternative mRNA splicing, via spliceosome
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0003723 ISS RNA binding
GO:0005634 IEA nucleus
GO:0006376 ISS mRNA splice site selection
GO:0010837 ISS regulation of keratinocyte proliferation
GO:0016607 ISS nuclear speck
GO:0036002 ISS pre-mRNA binding
GO:0044822 IEA poly(A) RNA binding
GO:0045617 ISS negative regulation of keratinocyte differentiation
GO:0048025 IEA negative regulation of mRNA splicing, via spliceosome
GO:0060501 ISO positive regulation of epithelial cell proliferation involved in lung morphogenesis
GO:0060548 ISO negative regulation of cell death
GO:0061041 ISS regulation of wound healing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244020 SRSF6-001 protein_coding Homo_sapiens 0 1554
ENST00000373795 SRSF4-001 protein_coding Homo_sapiens 0 222
ENST00000414124 AC005822.1-001 processed_pseudogene Homo_sapiens 0 1181
ENST00000447169 RP5-1158E12.2-001 processed_pseudogene Homo_sapiens 0 588
ENST00000466448 SRSF4-002 processed_transcript Homo_sapiens 0 222
ENST00000483871 SRSF6-002 nonsense_mediated_decay Homo_sapiens 0 1129
ENST00000497015 SRSF4-005 processed_transcript Homo_sapiens 0 213
ENST00000605204 SRSF4-007 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000622143 SRSF4-008 processed_transcript Homo_sapiens 0 213

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