C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secreted acidic cysteine rich glycoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130642 Sparc-005 ENSMUSG00000018593 10090 - 11:55395520-55402165 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonOvaryENSMUST00000130642
Transcript ID Adipose Adrenal Breast Colon Ovary
ENSMUST00000130642 1051.618±734.88 522.423±85.55 397.552±0.00 110.659±10.11 484.775±61.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00025X CIL_00025X_0002 CGP 11:55250609-55420080
CIL_0007IC CIL_0007IC_0003 CGP 11:55394500-55461239

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000039660 sparc-001 protein_coding Danio_rerio 0 529
ENSDART00000135627 sparc-002 protein_coding Danio_rerio 0 403
ENSDART00000141304 sparc-004 protein_coding Danio_rerio 3.00018e-42 176
ENSDART00000142572 sparc-005 retained_intron Danio_rerio 2e-33 147
ENST00000231061 SPARC-001 protein_coding Homo_sapiens 0 798
ENST00000520687 SPARC-002 retained_intron Homo_sapiens 0 593
ENST00000521569 SPARC-005 protein_coding Homo_sapiens 0 425
ENST00000524277 SPARC-006 retained_intron Homo_sapiens 0 357
ENST00000537849 SPARC-009 processed_transcript Homo_sapiens 0 211
ENST00000538026 SPARC-008 protein_coding Homo_sapiens 0 568
ENST00000620972 SPARC-201 protein_coding Homo_sapiens 0 798

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