C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interferon regulatory factor 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130697 Irf9-001 ENSMUSG00000002325 10090 + 14:55603985-55610030 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000130697
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000130697 15.403±2.45 19.968±4.44 12.689±0.13 3.092±0.61 23.623±3.92 12.741±3.87 6.124±0.52 10.714±1.76 11.957±4.25 22.940±2.98 1.590±0.27 16.164±6.34 9.858±2.37 1.315±0.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031B CIL_00031B_0002 CGP 14:55587441-55603693
CIL_00023F CIL_00023F_0002 CGP 14:55591708-55610030
CIL_0001CI CIL_0001CI_0002 CGP 14:55603571-55625395

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000975 IEA regulatory region DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0045351 IMP type I interferon biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000396864 IRF9-001 protein_coding Homo_sapiens 0 505
ENST00000557894 IRF9-004 protein_coding Homo_sapiens 0 368
ENST00000558468 IRF9-001 nonsense_mediated_decay Homo_sapiens 0 505
ENST00000559229 IRF9-009 retained_intron Homo_sapiens 0 322
ENST00000560542 IRF9-011 retained_intron Homo_sapiens 0 348
ENST00000561342 IRF9-014 nonsense_mediated_decay Homo_sapiens 0 405
ENST00000561415 IRF9-003 retained_intron Homo_sapiens 0 484

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