C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alpha thalassemia/mental retardation syndrome X-linked homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130980 Atrx-016 ENSMUSG00000031229 10090 - X:105887781-105929397 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonOvaryENSMUST00000130980
Transcript ID Adrenal Breast Colon Ovary
ENSMUST00000130980 4.089±0.00 8.002±0.00 3.988±0.00 9.808±1.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YN CIL_0001YN_0002 CGP X:105764279-105929397
CIL_0001YT CIL_0001YT_0002 CGP X:105797615-106011906

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IDA nuclear chromosome
GO:0000792 IDA heterochromatin
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007283 IMP spermatogenesis
GO:0030900 IMP forebrain development
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0060009 IMP Sertoli cell development
GO:0072520 IMP seminiferous tubule development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373344 ATRX-001 protein_coding Homo_sapiens 0 331
ENST00000395603 ATRX-002 protein_coding Homo_sapiens 0 331
ENST00000480283 ATRX-003 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000622960 ATRX-012 protein_coding Homo_sapiens 0 422
ENST00000624032 ATRX-004 protein_coding Homo_sapiens 0 331
ENST00000624166 ATRX-010 protein_coding Homo_sapiens 0 331
ENST00000624193 ATRX-014 processed_transcript Homo_sapiens 6e-32 141

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