C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131306 Pdlim7-007 ENSMUSG00000021493 10090 - 13:55506774-55513438 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartOvaryTestisENSMUST00000131306
Transcript ID Brain Breast Heart Ovary Testis
ENSMUST00000131306 7.843±3.65 4.440±0.00 3.086±0.30 13.475±1.59 0.839±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0002 VISTA 13:55104361-55707564
CIL_0002YE CIL_0002YE_0002 CGP 13:55473429-55513676
CIL_0002YF CIL_0002YF_0002 CGP 13:55495795-55528538

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0001726 IDA ruffle
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0030036 IPI actin cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355572 PDLIM7-004 protein_coding Homo_sapiens 0 464
ENST00000355841 PDLIM7-001 protein_coding Homo_sapiens 0 466
ENST00000359895 PDLIM7-003 protein_coding Homo_sapiens 0 355
ENST00000393546 PDLIM7-012 protein_coding Homo_sapiens 0 370
ENST00000393551 PDLIM7-007 protein_coding Homo_sapiens 0 466
ENST00000463411 PDLIM7-008 retained_intron Homo_sapiens 0 366
ENST00000486828 PDLIM7-006 nonsense_mediated_decay Homo_sapiens 0 477
ENST00000493815 PDLIM7-002 nonsense_mediated_decay Homo_sapiens 0 468
ENST00000505074 PDLIM7-015 protein_coding Homo_sapiens 0 472
ENST00000506161 PDLIM7-009 protein_coding Homo_sapiens 0 455
ENST00000506537 PDLIM7-010 protein_coding Homo_sapiens 0 337

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