C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin repeat containing, nuclear envelope 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000132161 Syne2-008 ENSMUSG00000063450 10090 + 12:76087760-76110926 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000132161
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000132161 10.418±0.57 8.070±0.53 8.515±1.21 8.587±3.97 7.092±2.18 14.427±1.16 5.624±0.41 10.324±1.28 1.261±0.49 23.220±1.98 1.409±0.46 48.999±6.72 3.383±0.87 4.316±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004WO CIL_0004WO_0002 CGP 12:75714248-76110926
CIL_00010O CIL_00010O_0002 CGP 12:75818134-76177259

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344113 SYNE2-001 protein_coding Homo_sapiens 0 1578
ENST00000357395 SYNE2-201 protein_coding Homo_sapiens 0 1214
ENST00000358025 SYNE2-202 protein_coding Homo_sapiens 0 2185
ENST00000394768 SYNE2-014 protein_coding Homo_sapiens 0 1578
ENST00000441438 SYNE2-007 protein_coding Homo_sapiens 0 303
ENST00000458046 SYNE2-006 protein_coding Homo_sapiens 0 813
ENST00000553289 SYNE2-013 nonsense_mediated_decay Homo_sapiens 0 1578
ENST00000553801 SYNE2-016 processed_transcript Homo_sapiens 0 298
ENST00000553806 SYNE2-019 retained_intron Homo_sapiens 0 800
ENST00000554584 SYNE2-002 protein_coding Homo_sapiens 0 1214
ENST00000554805 SYNE2-005 protein_coding Homo_sapiens 0 1101
ENST00000554997 SYNE2-020 retained_intron Homo_sapiens 0 518
ENST00000555002 SYNE2-011 protein_coding Homo_sapiens 0 2185
ENST00000555022 SYNE2-009 protein_coding Homo_sapiens 0 1367
ENST00000555241 SYNE2-018 processed_transcript Homo_sapiens 0 436
ENST00000555612 SYNE2-008 nonsense_mediated_decay Homo_sapiens 0 1369
ENST00000556906 SYNE2-017 protein_coding Homo_sapiens 0 656

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