C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: collagen, type II, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133488 Col2a1-005 ENSMUSG00000022483 10090 - 15:97995019-97999693 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLungENSMUST00000133488
Transcript ID Colon Lung
ENSMUST00000133488 0.103±0.00 0.061±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YL CIL_0005YL_0002 CGP 15:97964229-98004695
CIL_00079B CIL_00079B_0002 CGP 15:97975602-98093744

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000015092 col1a1b-001 protein_coding Danio_rerio 6e-38 161
ENST00000337299 COL2A1-008 protein_coding Homo_sapiens 0 658
ENST00000380518 COL2A1-001 protein_coding Homo_sapiens 0 658

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