C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133652 Cops3-006 ENSMUSG00000019373 10090 - 11:59836638-59839812 processed_transcript

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A0 CIL_0009A0_0002 VISTA 11:59693037-60296757
CIL_00040N CIL_00040N_0002 CGP 11:59791408-59839838
CIL_0000NX CIL_0000NX_0002 CGP 11:59817795-59880968

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268717 COPS3-001 protein_coding Homo_sapiens 0 339
ENST00000417352 COPS3-008 protein_coding Homo_sapiens 0 309
ENST00000462236 COPS3-003 retained_intron Homo_sapiens 0 237
ENST00000477299 COPS3-006 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000492672 COPS3-007 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000505334 RP11-91J3.1-001 processed_pseudogene Homo_sapiens 4e-28 130
ENST00000577210 COPS3-019 nonsense_mediated_decay Homo_sapiens 6e-19 99
ENST00000577246 COPS3-015 nonsense_mediated_decay Homo_sapiens 8e-37 158
ENST00000578317 COPS3-013 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000584216 COPS3-016 nonsense_mediated_decay Homo_sapiens 0 339

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