C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FERM domain containing 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133898 Frmd5-007 ENSMUSG00000027238 10090 - 2:121545529-121586433 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000133898
Transcript ID Adipose Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000133898 0.062±0.01 0.187±0.18 0.074±0.02 10.059±1.08 0.035±0.00 0.019±0.00 0.026±0.00 8.689±3.81 0.077±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0002 VISTA 2:121250003-121852600
CIL_00067Y CIL_00067Y_0002 CGP 2:121506723-121807087
CIL_000687 CIL_000687_0002 CGP 2:121545529-121936220

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000402883 FRMD5-009 protein_coding Homo_sapiens 0 1694
ENST00000417257 FRMD5-001 protein_coding Homo_sapiens 0 1692
ENST00000421674 FRMD5-003 nonsense_mediated_decay Homo_sapiens 0 1520
ENST00000449926 FRMD5-006 protein_coding Homo_sapiens 0 1692
ENST00000451277 FRMD5-010 nonsense_mediated_decay Homo_sapiens 0 1157
ENST00000458630 FRMD5-004 nonsense_mediated_decay Homo_sapiens 0 1013
ENST00000473965 FRMD5-008 retained_intron Homo_sapiens 0 370
ENST00000479319 FRMD5-007 retained_intron Homo_sapiens 0 357
ENST00000484674 FRMD5-005 protein_coding Homo_sapiens 0 1611
ENST00000558108 FRMD5-012 protein_coding Homo_sapiens 0 732
ENST00000618556 FRMD5-201 protein_coding Homo_sapiens 0 1013

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