C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: survival motor neuron 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134514 Smn1-002 ENSMUSG00000021645 10090 + 13:100124858-100127142 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverLungPlacentaENSMUST00000134514
Transcript ID Brain Breast Heart Kidney Liver Lung Placenta
ENSMUST00000134514 6.971±0.00 3.078±0.00 1.947±0.00 2.419±0.00 2.330±0.38 5.909±0.00 14.350±8.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZD CIL_0004ZD_0003 CGP 13:100107997-100137690
CIL_0004ZC CIL_0004ZC_0002 CGP 13:100124852-100202092

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000127956 smn1-201 protein_coding Danio_rerio 1e-19 100
ENSDART00000028099 smn1-001 protein_coding Danio_rerio 1e-19 100
ENST00000351205 SMN1-201 protein_coding Homo_sapiens 0 283
ENST00000380707 SMN1-001 protein_coding Homo_sapiens 0 283
ENST00000380741 SMN2-201 protein_coding Homo_sapiens 0 283
ENST00000380742 SMN2-002 protein_coding Homo_sapiens 0 283
ENST00000380743 SMN2-001 protein_coding Homo_sapiens 0 283
ENST00000503079 SMN1-008 protein_coding Homo_sapiens 0 283
ENST00000503678 SMN2-006 retained_intron Homo_sapiens 0 241
ENST00000506163 SMN1-007 protein_coding Homo_sapiens 0 283
ENST00000506239 SMN1-003 nonsense_mediated_decay Homo_sapiens 0 283
ENST00000506734 SMN2-003 nonsense_mediated_decay Homo_sapiens 0 283
ENST00000511812 SMN2-004 protein_coding Homo_sapiens 0 283
ENST00000514951 SMN1-002 protein_coding Homo_sapiens 0 283
ENST00000610814 SMN2-203 protein_coding Homo_sapiens 0 283
ENST00000611442 SMN2-206 protein_coding Homo_sapiens 0 283
ENST00000612446 SMN2-003 nonsense_mediated_decay Homo_sapiens 0 283
ENST00000612974 SMN1-202 protein_coding Homo_sapiens 0 283
ENST00000614240 SMN2-202 protein_coding Homo_sapiens 0 283
ENST00000614610 SMN1-203 protein_coding Homo_sapiens 0 283
ENST00000614773 SMN1-204 protein_coding Homo_sapiens 0 283
ENST00000618251 SMN2-001 protein_coding Homo_sapiens 0 283
ENST00000618661 SMN2-207 protein_coding Homo_sapiens 0 283
ENST00000619658 SMN2-002 protein_coding Homo_sapiens 0 283
ENST00000622158 SMN2-204 protein_coding Homo_sapiens 0 283
ENST00000622739 SMN2-205 protein_coding Homo_sapiens 0 283
ENST00000624634 SMN2-007 protein_coding Homo_sapiens 0 283

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