C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synovial apoptosis inhibitor 1, synoviolin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134667 Syvn1-002 ENSMUSG00000024807 10090 + 19:6047080-6053709 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLungMuscleOvaryPlacentaTestisENSMUST00000134667
Transcript ID Adipose Brain Breast Heart Lung Muscle Ovary Placenta Testis
ENSMUST00000134667 9.703±3.77 4.125±0.00 8.984±3.79 1.858±0.00 2.687±0.10 3.738±1.06 8.212±4.74 16.113±3.80 2.037±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0002 VISTA 19:5510095-6112698
CIL_0002MM CIL_0002MM_0002 CGP 19:6046576-6057751

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 ISO ubiquitin ligase complex
GO:0001701 IMP in utero embryonic development
GO:0004842 ISO ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005783 ISO endoplasmic reticulum
GO:0006986 ISO response to unfolded protein
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 ISO:IEA protein ubiquitination
GO:0018279 ISS protein N-linked glycosylation via asparagine
GO:0030433 ISS ER-associated ubiquitin-dependent protein catabolic process
GO:1902236 IMP negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000279242 MRPL49-001 protein_coding Homo_sapiens 2e-32 145
ENST00000294256 SYVN1-002 protein_coding Homo_sapiens 0 2754
ENST00000307289 SYVN1-011 protein_coding Homo_sapiens 0 1938
ENST00000377190 SYVN1-001 protein_coding Homo_sapiens 0 2745
ENST00000449943 SYVN1-003 retained_intron Homo_sapiens 0 1142
ENST00000524482 MRPL49-002 processed_transcript Homo_sapiens 1e-25 122
ENST00000525874 SYVN1-008 retained_intron Homo_sapiens 0 429
ENST00000526060 SYVN1-004 protein_coding Homo_sapiens 0 2819
ENST00000526121 SYVN1-014 processed_transcript Homo_sapiens 0 771
ENST00000526319 MRPL49-004 nonsense_mediated_decay Homo_sapiens 1e-29 135
ENST00000527142 SYVN1-009 nonsense_mediated_decay Homo_sapiens 0 652
ENST00000527765 SYVN1-010 processed_transcript Homo_sapiens 0 436
ENST00000528487 SYVN1-005 protein_coding Homo_sapiens 0 874
ENST00000529207 SYVN1-006 retained_intron Homo_sapiens 0 359
ENST00000530451 SYVN1-012 retained_intron Homo_sapiens 0 259
ENST00000531018 SYVN1-007 protein_coding Homo_sapiens 0 1157
ENST00000532671 MRPL49-003 retained_intron Homo_sapiens 2e-29 135
ENST00000532771 SYVN1-015 nonsense_mediated_decay Homo_sapiens 0 553
ENST00000533685 SYVN1-013 retained_intron Homo_sapiens 0 283

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