C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 5 class I
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134978 Tubb5-003 ENSMUSG00000001525 10090 - 17:35835901-35838208 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785
CIL_0001X1 CIL_0001X1_0002 CGP 17:35823230-35838306
CIL_0005ET CIL_0005ET_0002 CGP 17:35833921-35859670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005874 IDA microtubule
GO:0007017 IDA microtubule-based process
GO:0051225 IDA spindle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 230
ENSDART00000127071 FP102463.1-201 protein_coding Danio_rerio 6e-39 165
ENST00000248151 TUBBP1-001 transcribed_processed_pseudogene Homo_sapiens 0 322
ENST00000327892 TUBB-001 protein_coding Homo_sapiens 0 340
ENST00000330914 TUBB-002 protein_coding Homo_sapiens 0 340
ENST00000333628 TUBB2A-001 protein_coding Homo_sapiens 0 230
ENST00000383564 TUBB-001 protein_coding Homo_sapiens 0 340
ENST00000396384 TUBB-004 protein_coding Homo_sapiens 0 340
ENST00000396389 TUBB-003 protein_coding Homo_sapiens 0 340
ENST00000400530 TUBB-004 protein_coding Homo_sapiens 0 340
ENST00000400531 TUBB-002 protein_coding Homo_sapiens 0 340
ENST00000400534 TUBB-003 protein_coding Homo_sapiens 0 340
ENST00000412136 TUBB-003 protein_coding Homo_sapiens 0 340
ENST00000413547 TUBB-002 protein_coding Homo_sapiens 0 340
ENST00000419551 TUBB-003 protein_coding Homo_sapiens 0 340
ENST00000419792 TUBB-001 protein_coding Homo_sapiens 0 340
ENST00000420400 TUBB-003 protein_coding Homo_sapiens 0 340
ENST00000420618 TUBB-004 protein_coding Homo_sapiens 0 340
ENST00000421473 TUBB-001 protein_coding Homo_sapiens 0 340
ENST00000422650 TUBB-001 protein_coding Homo_sapiens 0 340
ENST00000422674 TUBB-001 protein_coding Homo_sapiens 0 340
ENST00000424734 TUBB-003 protein_coding Homo_sapiens 0 340
ENST00000425102 TUBB-004 protein_coding Homo_sapiens 0 340
ENST00000425136 TUBB-003 protein_coding Homo_sapiens 0 340
ENST00000426754 TUBB-003 protein_coding Homo_sapiens 0 340
ENST00000427480 TUBB-002 protein_coding Homo_sapiens 0 340
ENST00000432462 TUBB-001 protein_coding Homo_sapiens 0 340
ENST00000435546 TUBB-002 protein_coding Homo_sapiens 0 340
ENST00000436335 TUBB-002 protein_coding Homo_sapiens 0 340
ENST00000436628 TUBB-001 protein_coding Homo_sapiens 0 340
ENST00000437490 TUBB-002 protein_coding Homo_sapiens 0 340
ENST00000444441 TUBB-004 protein_coding Homo_sapiens 0 340
ENST00000446385 TUBB-004 protein_coding Homo_sapiens 0 340
ENST00000453350 TUBB-004 protein_coding Homo_sapiens 0 340
ENST00000454454 TUBB-002 protein_coding Homo_sapiens 0 340
ENST00000454620 TUBB-004 protein_coding Homo_sapiens 0 340
ENST00000478631 SCP2-009 nonsense_mediated_decay Homo_sapiens 0.00000000000003 86
ENST00000489942 TUBB2A-002 processed_transcript Homo_sapiens 1e-20 104
ENST00000518096 TUBBP1-002 processed_transcript Homo_sapiens 0 322

Loading