C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135455 Pop5-002 ENSMUSG00000060152 10090 + 5:115238032-115245351 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungOvaryPlacentaTestisENSMUST00000135455
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000135455 3.400±0.11 2.414±0.50 2.209±0.81 2.540±0.77 2.373±0.35 0.867±0.00 3.433±0.62 2.073±0.37 4.498±2.25 0.820±0.22 1.040±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZA CIL_0007ZA_0002 VISTA 5:114966986-115567561
CIL_0009CQ CIL_0009CQ_0002 VISTA 5:115188390-115791906

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000171 ISA ribonuclease MRP activity
GO:0000172 ISA ribonuclease MRP complex
GO:0004526 IDA ribonuclease P activity
GO:0005655 IDA nucleolar ribonuclease P complex
GO:0006364 ISA rRNA processing
GO:0008033 IDA tRNA processing
GO:0090501 IDA RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341039 POP5-002 protein_coding Homo_sapiens 7e-34 148
ENST00000357500 POP5-001 protein_coding Homo_sapiens 0 481
ENST00000539716 POP5-003 retained_intron Homo_sapiens 6e-34 148
ENST00000543355 POP5-006 processed_transcript Homo_sapiens 6e-34 148

Loading