C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lamin A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135494 Lmna-005 ENSMUSG00000028063 10090 - 3:88481846-88503337 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonENSMUST00000135494
Transcript ID Breast Colon
ENSMUST00000135494 25.112±0.70 85.713±8.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347559 LMNA-201 protein_coding Homo_sapiens 0 575
ENST00000361308 LMNA-202 protein_coding Homo_sapiens 2e-31 141
ENST00000368297 LMNA-007 protein_coding Homo_sapiens 0 342
ENST00000368299 LMNA-004 protein_coding Homo_sapiens 0 477
ENST00000368300 LMNA-001 protein_coding Homo_sapiens 0 909
ENST00000368301 LMNA-002 protein_coding Homo_sapiens 0 342
ENST00000448611 LMNA-017 protein_coding Homo_sapiens 0 739
ENST00000459904 LMNA-015 processed_transcript Homo_sapiens 0 259
ENST00000473598 LMNA-006 protein_coding Homo_sapiens 0 883
ENST00000496738 LMNA-005 processed_transcript Homo_sapiens 0 549
ENST00000498722 LMNA-019 retained_intron Homo_sapiens 0 342
ENST00000506981 LMNA-030 retained_intron Homo_sapiens 0 490
ENST00000508500 LMNA-020 protein_coding Homo_sapiens 0 477

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