C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin L1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135719 Ccnl1-003 ENSMUSG00000027829 10090 - 3:65946195-65958032 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyMuscleOvaryPlacentaTestisENSMUST00000135719
Transcript ID Brain Breast Heart Kidney Muscle Ovary Placenta Testis
ENSMUST00000135719 4.781±0.00 6.797±0.00 1.973±0.88 2.229±0.00 2.216±0.55 21.010±10.55 10.004±3.94 5.146±0.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081H CIL_00081H_0002 VISTA 3:65626895-66230134
CIL_00028X CIL_00028X_0002 CGP 3:65666228-65958249
CIL_00028W CIL_00028W_0002 CGP 3:65946151-66296837

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006396 IEA RNA processing
GO:0008023 ISA transcription elongation factor complex
GO:0019901 IEA protein kinase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295925 CCNL1-201 protein_coding Homo_sapiens 0 676
ENST00000295926 CCNL1-001 protein_coding Homo_sapiens 0 2106
ENST00000461804 CCNL1-002 protein_coding Homo_sapiens 0 1109
ENST00000464316 CCNL1-006 retained_intron Homo_sapiens 0 1897
ENST00000464575 CCNL1-015 retained_intron Homo_sapiens 0 206
ENST00000464679 CCNL1-019 retained_intron Homo_sapiens 0 739
ENST00000465947 CCNL1-012 nonsense_mediated_decay Homo_sapiens 0 1002
ENST00000466101 CCNL1-011 retained_intron Homo_sapiens 0 383
ENST00000467081 CCNL1-014 retained_intron Homo_sapiens 0 237
ENST00000467849 CCNL1-022 retained_intron Homo_sapiens 0 285
ENST00000468977 CCNL1-020 nonsense_mediated_decay Homo_sapiens 0 686
ENST00000470121 CCNL1-005 nonsense_mediated_decay Homo_sapiens 0 1317
ENST00000471044 CCNL1-010 retained_intron Homo_sapiens 0 564
ENST00000471247 CCNL1-008 retained_intron Homo_sapiens 0 1487
ENST00000474539 CCNL1-007 retained_intron Homo_sapiens 0 1786
ENST00000475298 CCNL1-003 nonsense_mediated_decay Homo_sapiens 0 1784
ENST00000476367 CCNL1-004 retained_intron Homo_sapiens 0 1807
ENST00000476744 CCNL1-021 retained_intron Homo_sapiens 0 857
ENST00000477127 CCNL1-009 nonsense_mediated_decay Homo_sapiens 0 1110
ENST00000478454 CCNL1-016 retained_intron Homo_sapiens 0 326
ENST00000479052 CCNL1-017 processed_transcript Homo_sapiens 0 545
ENST00000479596 CCNL1-013 retained_intron Homo_sapiens 0 1022
ENST00000481173 CCNL1-024 retained_intron Homo_sapiens 0 303
ENST00000483789 CCNL1-018 retained_intron Homo_sapiens 0 231
ENST00000495471 CCNL1-023 retained_intron Homo_sapiens 5e-40 169

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