C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 4B, cysteine peptidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135762 Atg4b-002 ENSMUSG00000026280 10090 + 1:93755045-93788179 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000135762
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000135762 3.382±0.82 7.071±1.35 1.840±0.14 11.245±0.38 4.449±0.81 3.029±0.56 1.169±0.08 1.793±0.50 2.116±0.60 4.132±0.34 0.671±0.06 5.964±2.29 2.182±0.03 2.506±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004U9 CIL_0004U9_0003 CGP 1:93685660-93754864
CIL_0003ST CIL_0003ST_0002 CGP 1:93701935-93790610
CIL_0004UA CIL_0004UA_0003 CGP 1:93751500-93801934

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344376 ATG4B-005 nonsense_mediated_decay Homo_sapiens 0 808
ENST00000400772 ATG4B-011 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000402096 ATG4B-006 protein_coding Homo_sapiens 0 702
ENST00000404914 ATG4B-002 protein_coding Homo_sapiens 0 808
ENST00000405546 ATG4B-001 protein_coding Homo_sapiens 0 721
ENST00000419606 ATG4B-015 protein_coding Homo_sapiens 0 529
ENST00000425239 ATG4B-023 protein_coding Homo_sapiens 0 599
ENST00000428861 ATG4B-027 protein_coding Homo_sapiens 0 555
ENST00000429899 ATG4B-026 protein_coding Homo_sapiens 0 350
ENST00000430617 ATG4B-020 protein_coding Homo_sapiens 0 350
ENST00000460211 ATG4B-028 retained_intron Homo_sapiens 0 444
ENST00000465399 ATG4B-016 retained_intron Homo_sapiens 0 606
ENST00000468018 ATG4B-021 retained_intron Homo_sapiens 0 451
ENST00000475693 ATG4B-008 retained_intron Homo_sapiens 0 446
ENST00000482507 ATG4B-004 retained_intron Homo_sapiens 0 702
ENST00000493618 ATG4B-024 retained_intron Homo_sapiens 0 350
ENST00000494132 ATG4B-029 retained_intron Homo_sapiens 0 193
ENST00000494465 ATG4B-003 retained_intron Homo_sapiens 0 606

Loading