C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135790 Sema6a-004 ENSMUSG00000019647 10090 - 18:47247440-47368448 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000135790
Transcript ID Adipose Bladder Brain Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000135790 0.700±0.00 0.704±0.00 4.121±2.11 0.402±0.08 0.488±0.00 0.338±0.04 6.054±0.16 0.305±0.13 0.927±0.13 2.743±0.92 0.228±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L9 CIL_0004L9_0002 CGP 18:46958862-47368870

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0007166 IDA cell surface receptor signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0016021 IEA integral component of membrane
GO:0030215 IPI semaphorin receptor binding
GO:0051642 IMP centrosome localization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257414 SEMA6A-002 protein_coding Homo_sapiens 0 4601
ENST00000343348 SEMA6A-001 protein_coding Homo_sapiens 0 2495
ENST00000502996 SEMA6A-011 processed_transcript Homo_sapiens 0.00001 55
ENST00000503402 SEMA6A-012 retained_intron Homo_sapiens 0 424
ENST00000503865 SEMA6A-006 protein_coding Homo_sapiens 0 1744
ENST00000503962 SEMA6A-010 processed_transcript Homo_sapiens 0 706
ENST00000506114 SEMA6A-014 processed_transcript Homo_sapiens 0 340
ENST00000509665 SEMA6A-009 protein_coding Homo_sapiens 0 556
ENST00000510263 SEMA6A-003 protein_coding Homo_sapiens 0 2222
ENST00000513137 SEMA6A-005 protein_coding Homo_sapiens 0 2030
ENST00000514316 SEMA6A-015 processed_transcript Homo_sapiens 0 401
ENST00000515009 SEMA6A-008 protein_coding Homo_sapiens 0 697
ENST00000515129 SEMA6A-004 protein_coding Homo_sapiens 0 1866

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