C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 85C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136175 Ccdc85c-201 ENSMUSG00000084883 10090 - 12:108206345-108275417 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastLiverOvaryPlacentaTestisENSMUST00000136175
Transcript ID Adrenal Bladder Brain Breast Liver Ovary Placenta Testis
ENSMUST00000136175 6.112±0.00 7.640±0.00 40.469±22.93 0.437±0.00 1.568±1.50 7.121±6.92 20.749±10.10 8.978±0.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CK CIL_0009CK_0002 VISTA 12:107949271-108552884
CIL_0003HE CIL_0003HE_0002 CGP 12:108179738-108275417
CIL_0001A9 CIL_0001A9_0003 CGP 12:108206345-108328300

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005923 IEA tight junction
GO:0021987 IMP cerebral cortex development
GO:0043296 IDA apical junction complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380243 CCDC85C-001 protein_coding Homo_sapiens 0 1712

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