C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA polymerase II associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136419 Rpap1-005 ENSMUSG00000034032 10090 - 2:119763963-119787500 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000136419
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000136419 1.207±0.03 5.797±3.11 0.840±0.00 3.225±0.00 2.915±1.56 4.366±1.12 2.793±0.10 3.001±0.82 2.378±1.00 3.034±0.71 8.715±4.12 4.679±2.63 1.307±0.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IS CIL_0005IS_0003 CGP 2:119751320-119787537
CIL_0005F5 CIL_0005F5_0002 CGP 2:119763304-119818104

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304330 RPAP1-001 protein_coding Homo_sapiens 0 3101
ENST00000561603 RPAP1-004 protein_coding Homo_sapiens 0 2045
ENST00000562303 RPAP1-005 nonsense_mediated_decay Homo_sapiens 0 2745
ENST00000563293 RPAP1-011 retained_intron Homo_sapiens 2e-21 106
ENST00000565167 RPAP1-006 retained_intron Homo_sapiens 0 950
ENST00000566863 RPAP1-008 protein_coding Homo_sapiens 0 396
ENST00000567866 RPAP1-010 protein_coding Homo_sapiens 0 420
ENST00000568413 RPAP1-015 processed_transcript Homo_sapiens 0 436

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