C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 80
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136448 Ift80-002 ENSMUSG00000027778 10090 - 3:68892499-69004559 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000136448
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000136448 0.627±0.18 0.926±0.14 0.454±0.00 0.487±0.12 1.000±0.22 0.481±0.20 0.317±0.03 0.472±0.25 0.577±0.34 0.728±0.33 0.068±0.02 0.639±0.19 0.230±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JR CIL_0004JR_0003 CGP 3:68892499-69034623

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326448 IFT80-001 protein_coding Homo_sapiens 0 2743
ENST00000463240 IFT80-027 processed_transcript Homo_sapiens 0 285
ENST00000465537 IFT80-022 protein_coding Homo_sapiens 0 913
ENST00000468218 IFT80-015 protein_coding Homo_sapiens 0 399
ENST00000468327 IFT80-021 processed_transcript Homo_sapiens 0 363
ENST00000472555 IFT80-024 nonsense_mediated_decay Homo_sapiens 0 436
ENST00000472773 IFT80-016 processed_transcript Homo_sapiens 0 468
ENST00000475677 IFT80-008 protein_coding Homo_sapiens 0 538
ENST00000477495 IFT80-013 processed_transcript Homo_sapiens 0 468
ENST00000478278 IFT80-028 retained_intron Homo_sapiens 0 289
ENST00000478370 IFT80-014 protein_coding Homo_sapiens 0 438
ENST00000478460 IFT80-017 processed_transcript Homo_sapiens 0 407
ENST00000482317 IFT80-019 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000483325 IFT80-026 protein_coding Homo_sapiens 0 364
ENST00000483465 IFT80-004 protein_coding Homo_sapiens 0 2732
ENST00000483754 RP11-432B6.3-001 nonsense_mediated_decay Homo_sapiens 0 2278
ENST00000484963 IFT80-023 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000486856 IFT80-020 protein_coding Homo_sapiens 0 315
ENST00000487943 IFT80-003 retained_intron Homo_sapiens 0 2104
ENST00000489004 IFT80-012 protein_coding Homo_sapiens 0 368
ENST00000496589 IFT80-002 protein_coding Homo_sapiens 0 2732
ENST00000498409 IFT80-009 protein_coding Homo_sapiens 0 630
ENST00000558038 RP11-390M11.1-001 processed_pseudogene Homo_sapiens 0 1062

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