C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sequestosome 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136936 Sqstm1-005 ENSMUSG00000015837 10090 - 11:50200167-50202954 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryPlacentaTestisENSMUST00000136936
Transcript ID Brain Breast Ovary Placenta Testis
ENSMUST00000136936 58.527±0.00 35.032±0.00 99.945±6.47 105.197±25.67 9.411±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000407 IDA pre-autophagosomal structure
GO:0003712 TAS transcription cofactor activity
GO:0005515 IPI protein binding
GO:0016235 IDA aggresome
GO:0042802 IDA identical protein binding
GO:2001141 TAS regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360718 SQSTM1-002 protein_coding Homo_sapiens 0 254
ENST00000389805 SQSTM1-001 protein_coding Homo_sapiens 0 254
ENST00000510187 SQSTM1-013 protein_coding Homo_sapiens 8e-36 156
ENST00000522663 C5orf45-004 nonsense_mediated_decay Homo_sapiens 0 215

Loading