C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR (HIV) RNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136968 Tarbp2-004 ENSMUSG00000023051 10090 + 15:102518427-102523676 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryENSMUST00000136968
Transcript ID Brain Breast Ovary
ENSMUST00000136968 0.416±0.00 1.592±0.00 1.456±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000266987 TARBP2-001 protein_coding Homo_sapiens 0 270
ENST00000394357 TARBP2-009 protein_coding Homo_sapiens 0 207
ENST00000456234 TARBP2-006 protein_coding Homo_sapiens 0 207
ENST00000546889 TARBP2-003 retained_intron Homo_sapiens 0 237
ENST00000547064 TARBP2-015 nonsense_mediated_decay Homo_sapiens 8e-33 145
ENST00000547388 TARBP2-010 retained_intron Homo_sapiens 2.8026e-45 185
ENST00000548971 TARBP2-005 nonsense_mediated_decay Homo_sapiens 0 233
ENST00000549572 TARBP2-007 nonsense_mediated_decay Homo_sapiens 0 207
ENST00000549610 TARBP2-002 retained_intron Homo_sapiens 0 243
ENST00000549679 TARBP2-008 nonsense_mediated_decay Homo_sapiens 0 207
ENST00000550147 TARBP2-004 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000550407 TARBP2-016 protein_coding Homo_sapiens 0 209
ENST00000551157 TARBP2-017 retained_intron Homo_sapiens 1e-31 141
ENST00000551741 TARBP2-022 nonsense_mediated_decay Homo_sapiens 0 209
ENST00000552650 TARBP2-012 retained_intron Homo_sapiens 8e-39 165
ENST00000552817 TARBP2-011 protein_coding Homo_sapiens 9e-32 141
ENST00000552857 TARBP2-021 protein_coding Homo_sapiens 0 361

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