C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hemicentin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137197 Hmcn1-003 ENSMUSG00000066842 10090 - 1:150563527-150993051 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000137197
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000137197 0.177±0.00 0.142±0.00 0.338±0.16 0.742±0.02 0.605±0.26 0.679±0.42 0.080±0.04 0.271±0.03 3.043±0.00 0.044±0.00 0.450±0.28 0.081±0.00 0.064±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065A CIL_00065A_0002 CGP 1:150562524-151364422

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005576 IDA extracellular region
GO:0005604 IDA basement membrane
GO:0005938 IDA cell cortex
GO:0008150 ND biological_process
GO:0030054 IDA cell junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000020389 hmcn1-201 protein_coding Danio_rerio 0 265
ENSDART00000144705 hmcn1-001 protein_coding Danio_rerio 0 265
ENST00000271588 HMCN1-001 protein_coding Homo_sapiens 0 16850
ENST00000414277 HMCN1-004 protein_coding Homo_sapiens 0 894
ENST00000475585 HMCN1-005 processed_transcript Homo_sapiens 0 320
ENST00000485744 HMCN1-003 processed_transcript Homo_sapiens 0 2034
ENST00000493413 HMCN1-002 processed_transcript Homo_sapiens 0 717

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