C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: enhancer of mRNA decapping 3 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137245 Edc3-002 ENSMUSG00000038957 10090 + 9:57708555-57751403 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000137245
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000137245 3.454±0.66 4.463±0.25 6.041±1.23 4.532±0.21 4.623±1.34 1.365±0.33 2.532±0.47 2.373±0.24 7.456±1.14 7.402±1.83 3.100±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0002 VISTA 9:57506610-58107834

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315127 EDC3-001 protein_coding Homo_sapiens 0 1410
ENST00000345005 CLK3-001 protein_coding Homo_sapiens 0 614
ENST00000395066 CLK3-003 protein_coding Homo_sapiens 0 516
ENST00000426797 EDC3-003 protein_coding Homo_sapiens 0 1336
ENST00000454830 CLK3-008 retained_intron Homo_sapiens 0 612
ENST00000483723 CLK3-002 nonsense_mediated_decay Homo_sapiens 0 614
ENST00000562078 CLK3-004 retained_intron Homo_sapiens 0 501
ENST00000562174 EDC3-005 protein_coding Homo_sapiens 0 616
ENST00000563009 EDC3-016 protein_coding Homo_sapiens 0 324
ENST00000563292 EDC3-014 protein_coding Homo_sapiens 0 217
ENST00000564468 CLK3-020 nonsense_mediated_decay Homo_sapiens 0 302
ENST00000565602 EDC3-002 nonsense_mediated_decay Homo_sapiens 0 1637
ENST00000566219 EDC3-009 protein_coding Homo_sapiens 0 667
ENST00000566243 EDC3-017 protein_coding Homo_sapiens 0 217
ENST00000566828 EDC3-018 protein_coding Homo_sapiens 0 217
ENST00000567813 EDC3-015 protein_coding Homo_sapiens 0 217
ENST00000568176 EDC3-004 protein_coding Homo_sapiens 0 1336
ENST00000568232 CLK3-005 retained_intron Homo_sapiens 0 723
ENST00000569007 EDC3-011 retained_intron Homo_sapiens 0 233
ENST00000569406 CLK3-006 retained_intron Homo_sapiens 0 608
ENST00000569561 EDC3-010 protein_coding Homo_sapiens 0 217
ENST00000569606 EDC3-006 retained_intron Homo_sapiens 0 582
ENST00000570138 EDC3-013 protein_coding Homo_sapiens 0 217
ENST00000616744 RP11-471J7.1-001 unprocessed_pseudogene Homo_sapiens 0 239

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