C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137473 Alg6-002 ENSMUSG00000073792 10090 + 4:99715664-99730223 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungOvaryTestisENSMUST00000137473
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Ovary Testis
ENSMUST00000137473 0.247±0.16 0.108±0.03 0.230±0.06 0.226±0.03 0.158±0.00 0.159±0.00 0.247±0.04 0.288±0.11 0.150±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KW CIL_0007KW_0002 UCNEbase 4:99267882-99771733
CIL_0008AH CIL_0008AH_0002 VISTA 4:99273882-99874766
CIL_0002G4 CIL_0002G4_0002 CGP 4:99656299-99763460
CIL_0002G7 CIL_0002G7_0002 CGP 4:99715664-99929813

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263440 ALG6-006 protein_coding Homo_sapiens 3e-36 158
ENST00000371108 ALG6-001 protein_coding Homo_sapiens 5e-36 158
ENST00000487136 ALG6-002 nonsense_mediated_decay Homo_sapiens 1e-25 121
ENST00000603108 ALG6-007 nonsense_mediated_decay Homo_sapiens 2e-36 158

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