C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137771 Ldb1-004 ENSMUSG00000025223 10090 - 19:46033425-46039481 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000137771
Transcript ID Adipose Bladder Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000137771 16.324±0.42 23.222±0.00 44.916±7.55 35.436±20.15 47.848±17.16 3.400±0.23 36.501±11.40 19.291±7.33 1.097±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099F CIL_00099F_0002 VISTA 19:45434459-46035623
CIL_00099E CIL_00099E_0002 VISTA 19:45446900-46047683
CIL_0005WD CIL_0005WD_0002 CGP 19:46003478-46045214
CIL_00058F CIL_00058F_0002 CGP 19:46032593-46072915

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000972 IMP transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0000989 IPI transcription factor binding transcription factor activity
GO:0001158 IDA enhancer sequence-specific DNA binding
GO:0001702 IMP gastrulation with mouth forming second
GO:0001942 IGI hair follicle development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003712 IEA transcription cofactor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0009948 IMP anterior/posterior axis specification
GO:0010669 IGI epithelial structure maintenance
GO:0016055 IMP Wnt signaling pathway
GO:0019899 IPI enzyme binding
GO:0021549 IMP cerebellum development
GO:0021702 IMP cerebellar Purkinje cell differentiation
GO:0022607 IGI cellular component assembly
GO:0030182 IEP neuron differentiation
GO:0030274 IDA LIM domain binding
GO:0032784 IMP regulation of DNA-templated transcription, elongation
GO:0035019 IGI somatic stem cell maintenance
GO:0042803 IDA protein homodimerization activity
GO:0043234 IDA protein complex
GO:0043621 IPI protein self-association
GO:0043973 IMP histone H3-K4 acetylation
GO:0045647 IMP negative regulation of erythrocyte differentiation
GO:0045785 IGI positive regulation of cell adhesion
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0046985 IMP positive regulation of hemoglobin biosynthetic process
GO:0060319 TAS primitive erythrocyte differentiation
GO:0060322 IGI head development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361198 LDB1-001 protein_coding Homo_sapiens 0 2019
ENST00000425280 LDB1-201 protein_coding Homo_sapiens 0 1471
ENST00000461873 LDB1-002 processed_transcript Homo_sapiens 0 512
ENST00000490751 LDB1-003 processed_transcript Homo_sapiens 0 608

Loading