C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB23, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138024 Rab23-002 ENSMUSG00000004768 10090 + 1:33719909-33742557 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyMuscleENSMUST00000138024
Transcript ID Breast Kidney Muscle
ENSMUST00000138024 0.505±0.00 0.337±0.00 0.241±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087X CIL_00087X_0002 VISTA 1:33689736-34292240
CIL_0002SR CIL_0002SR_0002 CGP 1:33719887-33757795

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0007165 IMP signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007399 IMP nervous system development
GO:0008589 IGI regulation of smoothened signaling pathway
GO:0021513 IGI spinal cord dorsal/ventral patterning
GO:0042733 IMP embryonic digit morphogenesis
GO:0045861 IMP negative regulation of proteolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317483 RAB23-001 protein_coding Homo_sapiens 0 625
ENST00000468148 RAB23-201 protein_coding Homo_sapiens 0 625

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