C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trinucleotide repeat containing 6C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138299 Tnrc6c-003 ENSMUSG00000025571 10090 + 11:117721018-117762264 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000138299
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000138299 4.463±1.54 2.465±0.52 13.398±2.44 2.919±1.24 2.332±0.91 1.474±0.54 1.488±0.62 2.881±1.19 2.720±0.25 4.724±1.68 2.711±0.98 5.141±1.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_00009V CIL_00009V_0002 CGP 11:117654289-117782198

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001706 IMP endoderm formation
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component
GO:0007492 IMP endoderm development
GO:0035162 IMP embryonic hemopoiesis
GO:0048568 IMP embryonic organ development
GO:0060964 IMP regulation of gene silencing by miRNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000113726 TNRC6C (2 of 3)-201 protein_coding Danio_rerio 0 891
ENSDART00000151634 TNRC6C (2 of 3)-001 protein_coding Danio_rerio 0 891
ENST00000301624 TNRC6C-201 protein_coding Homo_sapiens 0 6950
ENST00000335749 TNRC6C-202 protein_coding Homo_sapiens 0 5906
ENST00000587990 TNRC6C-009 retained_intron Homo_sapiens 0 652
ENST00000588061 TNRC6C-002 protein_coding Homo_sapiens 0 6950
ENST00000588549 TNRC6C-004 protein_coding Homo_sapiens 0 531
ENST00000588847 TNRC6C-001 protein_coding Homo_sapiens 0 5906
ENST00000591851 TNRC6C-003 retained_intron Homo_sapiens 0 1502
ENST00000592251 TNRC6C-008 retained_intron Homo_sapiens 0 529
ENST00000592566 TNRC6C-006 retained_intron Homo_sapiens 0 339

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