C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type II, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138368 Scn2a1-003 ENSMUSG00000075318 10090 + 2:65682280-65683866 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalLiverENSMUST00000138368
Transcript ID Adrenal Liver
ENSMUST00000138368 0.312±0.00 0.022±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CO CIL_0006CO_0002 CGP 2:65457118-65767447
CIL_0006CJ CIL_0006CJ_0002 CGP 2:65620857-66031546

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000097722 SCN11A-201 protein_coding Danio_rerio 0 246
ENST00000283254 SCN3A-001 protein_coding Homo_sapiens 0 368
ENST00000283256 SCN2A-001 protein_coding Homo_sapiens 0 366
ENST00000303354 SCN9A-201 protein_coding Homo_sapiens 5e-35 156
ENST00000303395 SCN1A-001 protein_coding Homo_sapiens 0 292
ENST00000333535 SCN5A-014 protein_coding Homo_sapiens 0 235
ENST00000354534 SCN8A-001 protein_coding Homo_sapiens 3e-23 117
ENST00000355133 SCN8A-005 protein_coding Homo_sapiens 1e-23 117
ENST00000375405 SCN1A-002 protein_coding Homo_sapiens 0 292
ENST00000375427 SCN2A-002 protein_coding Homo_sapiens 3e-40 172
ENST00000375437 SCN2A-201 protein_coding Homo_sapiens 0 366
ENST00000409050 SCN1A-003 protein_coding Homo_sapiens 0 292
ENST00000409435 SCN9A-004 protein_coding Homo_sapiens 3e-35 156
ENST00000409672 SCN9A-001 protein_coding Homo_sapiens 5e-35 156
ENST00000413689 SCN5A-001 protein_coding Homo_sapiens 5.04467e-44 185
ENST00000414099 SCN5A-004 protein_coding Homo_sapiens 5.04467e-44 185
ENST00000423058 SCN1A-201 protein_coding Homo_sapiens 0 292
ENST00000423572 SCN5A-003 protein_coding Homo_sapiens 0 235
ENST00000424833 SCN2A-003 protein_coding Homo_sapiens 0 366
ENST00000425664 SCN5A-201 protein_coding Homo_sapiens 5.04467e-44 185
ENST00000435607 SCN4A-201 protein_coding Homo_sapiens 0 207
ENST00000440431 SCN3A-004 protein_coding Homo_sapiens 0 368
ENST00000443581 SCN5A-202 protein_coding Homo_sapiens 0 235
ENST00000449557 SCN5A-010 protein_coding Homo_sapiens 0 235
ENST00000450102 SCN5A-008 protein_coding Homo_sapiens 4.06377e-44 185
ENST00000451551 SCN5A-203 protein_coding Homo_sapiens 5.04467e-44 185
ENST00000452182 SCN9A-003 protein_coding Homo_sapiens 0 289
ENST00000454569 SCN9A-002 protein_coding Homo_sapiens 0 289
ENST00000455624 SCN5A-002 protein_coding Homo_sapiens 4.06377e-44 185
ENST00000472119 SCN9A-006 retained_intron Homo_sapiens 4e-36 156
ENST00000480032 SCN2A-005 retained_intron Homo_sapiens 0 366
ENST00000486878 SCN2A-004 retained_intron Homo_sapiens 0 366
ENST00000545061 SCN8A-201 protein_coding Homo_sapiens 3e-23 117
ENST00000550891 SCN8A-003 protein_coding Homo_sapiens 0 250
ENST00000551216 SCN8A-004 protein_coding Homo_sapiens 0 250
ENST00000578147 SCN4A-001 protein_coding Homo_sapiens 0 207
ENST00000599343 SCN8A-202 protein_coding Homo_sapiens 3e-23 117

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