C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: breast carcinoma amplified sequence 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138423 Bcas3-014 ENSMUSG00000059439 10090 + 11:85353185-85371163 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000569 CIL_000569_0003 CGP 11:85311244-85826058
CIL_000703 CIL_000703_0002 CGP 11:85353167-85841948

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0071944 IDA cell periphery

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000390652 BCAS3-001 protein_coding Homo_sapiens 0 204
ENST00000407086 BCAS3-002 protein_coding Homo_sapiens 0 219
ENST00000408905 BCAS3-013 protein_coding Homo_sapiens 4.99997e-41 174
ENST00000588168 BCAS3-014 protein_coding Homo_sapiens 6.99949e-42 174
ENST00000588462 BCAS3-012 protein_coding Homo_sapiens 4.99997e-41 174
ENST00000588532 BCAS3-017 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000589222 BCAS3-004 protein_coding Homo_sapiens 0 230
ENST00000589916 BCAS3-020 retained_intron Homo_sapiens 0 226
ENST00000591147 BCAS3-015 nonsense_mediated_decay Homo_sapiens 0 230
ENST00000591371 BCAS3-019 processed_transcript Homo_sapiens 0 230
ENST00000592393 BCAS3-021 processed_transcript Homo_sapiens 0 204
ENST00000592848 BCAS3-016 nonsense_mediated_decay Homo_sapiens 0 202
ENST00000593004 BCAS3-034 processed_transcript Homo_sapiens 0 230
ENST00000613443 BCAS3-201 protein_coding Homo_sapiens 0 204
ENST00000614888 BCAS3-202 protein_coding Homo_sapiens 0 204

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