C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138502 Rps20-001 ENSMUSG00000028234 10090 - 4:3831334-3835665 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000138502
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000138502 96.378±64.30 196.856±44.89 45.848±0.00 23.872±23.10 95.476±97.39 128.486±40.38 10.358±2.75 33.168±25.10 47.380±50.12 96.733±8.93 7.453±2.90 165.480±96.50 37.668±49.93 65.863±40.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U6 CIL_0001U6_0002 CGP 4:3678115-3835665
CIL_0002RN CIL_0002RN_0002 CGP 4:3831334-3872105

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0006412 IEA translation
GO:0016020 IEA membrane
GO:0022627 IEA cytosolic small ribosomal subunit
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000009589 RPS20-002 protein_coding Homo_sapiens 0 549
ENST00000312184 TMEM70-001 protein_coding Homo_sapiens 0 374
ENST00000402520 RPS20P2-001 processed_pseudogene Homo_sapiens 8e-40 167
ENST00000412545 RPS20P14-001 processed_pseudogene Homo_sapiens 0 416
ENST00000420122 RP11-443F16.1-001 processed_pseudogene Homo_sapiens 0 278
ENST00000427546 AC008850.3-001 processed_pseudogene Homo_sapiens 0 285
ENST00000434808 RPS20P5-001 processed_pseudogene Homo_sapiens 0 333
ENST00000441098 RP11-126D17.1-001 processed_pseudogene Homo_sapiens 0 206
ENST00000443291 AC079922.2-001 processed_pseudogene Homo_sapiens 0 429
ENST00000451209 RPS20P10-001 processed_pseudogene Homo_sapiens 0 329
ENST00000455561 RP4-575N6.2-001 processed_pseudogene Homo_sapiens 0 379
ENST00000456044 RPS20P32-001 processed_pseudogene Homo_sapiens 0 329
ENST00000457473 RPS20P24-001 processed_pseudogene Homo_sapiens 0 392
ENST00000461659 RPS20P4-001 processed_pseudogene Homo_sapiens 0 346
ENST00000462007 RPS20P35-001 processed_pseudogene Homo_sapiens 0 407
ENST00000466800 RP11-120B7.1-001 processed_pseudogene Homo_sapiens 0 409
ENST00000466859 RPS20P21-001 processed_pseudogene Homo_sapiens 0 335
ENST00000468335 CTD-2301A4.1-001 processed_pseudogene Homo_sapiens 0 278
ENST00000473109 RP11-390K5.1-001 processed_pseudogene Homo_sapiens 0 462
ENST00000495139 RP11-562A8.1-001 processed_pseudogene Homo_sapiens 0 351
ENST00000519606 RPS20-007 protein_coding Homo_sapiens 0 276
ENST00000519807 RPS20-001 protein_coding Homo_sapiens 0 507
ENST00000520490 RPS20-006 processed_transcript Homo_sapiens 0 276
ENST00000520627 RPS20-011 protein_coding Homo_sapiens 0 363
ENST00000521262 RPS20-003 protein_coding Homo_sapiens 0 468
ENST00000521289 RPS20-010 retained_intron Homo_sapiens 0 303
ENST00000523936 RPS20-009 protein_coding Homo_sapiens 0 278
ENST00000524349 RPS20-004 protein_coding Homo_sapiens 0 464
ENST00000618656 RPS20-201 protein_coding Homo_sapiens 0 507

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