C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: huntingtin-associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138603 Hap1-005 ENSMUSG00000006930 10090 - 11:100347327-100356128 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000138603
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000138603 0.550±0.34 5.220±3.78 0.196±0.00 35.888±2.17 1.462±0.32 1.328±0.42 0.392±0.12 0.628±0.41 0.254±0.13 1.167±0.31 0.056±0.02 1.387±0.68 0.313±0.10 4.440±2.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BD CIL_0007BD_0002 CGP 11:100334407-100356128
CIL_0000TS CIL_0000TS_0003 CGP 11:100347327-100397763

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005739 IEA mitochondrion
GO:0005764 IEA lysosome
GO:0005776 IDA autophagic vacuole
GO:0005783 IEA endoplasmic reticulum
GO:0005856 IEA cytoskeleton
GO:0006887 IEA exocytosis
GO:0006914 IEA autophagy
GO:0008089 ISS anterograde axon cargo transport
GO:0008090 ISS retrograde axon cargo transport
GO:0008104 IEA protein localization
GO:0015031 IEA protein transport
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016234 IEA inclusion body
GO:0017157 IMP regulation of exocytosis
GO:0021549 IMP cerebellum development
GO:0021979 IMP hypothalamus cell differentiation
GO:0030030 IEA cell projection organization
GO:0030054 IEA cell junction
GO:0031587 ISS positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
GO:0032230 ISS positive regulation of synaptic transmission, GABAergic
GO:0032901 ISS positive regulation of neurotrophin production
GO:0042995 IEA cell projection
GO:0044325 ISS ion channel binding
GO:0045202 IEA synapse
GO:0045742 ISS positive regulation of epidermal growth factor receptor signaling pathway
GO:0047496 IMP vesicle transport along microtubule
GO:0048011 IMP neurotrophin TRK receptor signaling pathway
GO:0048403 ISS brain-derived neurotrophic factor binding
GO:0050769 IMP positive regulation of neurogenesis
GO:1902430 ISS negative regulation of beta-amyloid formation
GO:1902513 IMP regulation of organelle transport along microtubule
GO:1902857 IMP positive regulation of nonmotile primary cilium assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310778 HAP1-006 protein_coding Homo_sapiens 0 422
ENST00000341193 HAP1-002 protein_coding Homo_sapiens 0 407
ENST00000347901 HAP1-001 protein_coding Homo_sapiens 0 422
ENST00000393939 HAP1-007 protein_coding Homo_sapiens 0 407

Loading