C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: nucleoporin 88
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138634 Nup88-007 ENSMUSG00000040667 10090 - 11:70949565-70969961 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENSMUST00000138634
Transcript ID Placenta Testis
ENSMUST00000138634 9.965±0.00 17.120±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020X CIL_00020X_0002 CGP 11:70790932-70943105
CIL_00060J CIL_00060J_0003 CGP 11:70844778-70969973
CIL_00045W CIL_00045W_0002 CGP 11:70943058-70977833

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000572019 NUP88-009 processed_transcript Homo_sapiens 0 270
ENST00000572290 NUP88-005 nonsense_mediated_decay Homo_sapiens 0 268
ENST00000573584 NUP88-001 protein_coding Homo_sapiens 0 1434
ENST00000574867 NUP88-002 retained_intron Homo_sapiens 0 1434

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