C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator complex subunit 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138638 Med20-003 ENSMUSG00000092558 10090 + 17:47611608-47624248 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverLungOvaryPlacentaENSMUST00000138638
Transcript ID Adipose Bladder Brain Breast Colon Liver Lung Ovary Placenta
ENSMUST00000138638 4.227±0.00 4.013±0.77 1.652±0.00 3.118±0.00 4.384±0.00 3.795±0.68 3.510±0.25 3.397±0.13 1.971±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000963 CIL_000963_0002 VISTA 17:47571879-48173076
CIL_0006L5 CIL_0006L5_0002 CGP 17:47599331-47624418

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265350 MED20-001 protein_coding Homo_sapiens 0 588
ENST00000330459 KPNA2-001 protein_coding Homo_sapiens 0 1539
ENST00000394251 MED20-004 protein_coding Homo_sapiens 0 566
ENST00000409060 MED20-003 protein_coding Homo_sapiens 0 614
ENST00000409312 MED20-007 protein_coding Homo_sapiens 0 466
ENST00000415694 RP11-417L14.1-001 processed_pseudogene Homo_sapiens 0 215
ENST00000423226 AC073310.4-001 processed_pseudogene Homo_sapiens 0 514
ENST00000467535 MED20-002 processed_transcript Homo_sapiens 0 379
ENST00000482361 MED20-006 processed_transcript Homo_sapiens 0 375
ENST00000537025 KPNA2-002 protein_coding Homo_sapiens 0 1539
ENST00000584190 RP13-104F24.1-002 transcribed_unprocessed_pseudogene Homo_sapiens 0 466
ENST00000613074 MED20-201 protein_coding Homo_sapiens 0 573

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