C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138843 Slc11a2-002 ENSMUSG00000023030 10090 - 15:100392563-100423002 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000138843
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000138843 5.268±0.34 8.573±1.39 2.156±0.22 5.034±2.54 2.992±0.38 4.080±0.29 3.607±0.37 15.819±4.10 8.423±2.16 6.278±0.61 4.758±0.69 4.383±1.56 7.645±3.75 6.030±2.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007B4 CIL_0007B4_0002 CGP 15:100364542-100425072

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005381 IDA iron ion transmembrane transporter activity
GO:0005768 IDA endosome
GO:0005769 IDA early endosome
GO:0005886 IDA plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0005903 IDA brush border
GO:0006778 IMP porphyrin-containing compound metabolic process
GO:0006779 IMP porphyrin-containing compound biosynthetic process
GO:0006783 IMP heme biosynthetic process
GO:0006824 IDA cobalt ion transport
GO:0006826 IDA iron ion transport
GO:0007611 IMP learning or memory
GO:0009986 IDA cell surface
GO:0012505 IDA endomembrane system
GO:0015078 IDA hydrogen ion transmembrane transporter activity
GO:0015087 IDA cobalt ion transmembrane transporter activity
GO:0015093 IDA ferrous iron transmembrane transporter activity
GO:0015684 IDA ferrous iron transport
GO:0015992 IDA proton transport
GO:0048813 IMP dendrite morphogenesis
GO:0048821 IMP erythrocyte development
GO:0055037 IDA recycling endosome
GO:0060586 IMP multicellular organismal iron ion homeostasis
GO:0070627 IMP ferrous iron import
GO:1902600 IDA hydrogen ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262051 SLC11A2-006 protein_coding Homo_sapiens 0 1977
ENST00000262052 SLC11A2-002 protein_coding Homo_sapiens 0 2180
ENST00000394904 SLC11A2-201 protein_coding Homo_sapiens 0 2178
ENST00000541174 SLC11A2-005 protein_coding Homo_sapiens 0 2178
ENST00000545993 SLC11A2-008 protein_coding Homo_sapiens 0 2126
ENST00000546488 SLC11A2-012 protein_coding Homo_sapiens 0 346
ENST00000546636 SLC11A2-004 nonsense_mediated_decay Homo_sapiens 0 1999
ENST00000546743 SLC11A2-003 protein_coding Homo_sapiens 0 1921
ENST00000547198 SLC11A2-007 protein_coding Homo_sapiens 0 1991
ENST00000547510 SLC11A2-015 nonsense_mediated_decay Homo_sapiens 0 736
ENST00000547579 SLC11A2-010 protein_coding Homo_sapiens 0 645
ENST00000547688 SLC11A2-001 protein_coding Homo_sapiens 0 2178
ENST00000547732 SLC11A2-014 protein_coding Homo_sapiens 0 569
ENST00000548193 SLC11A2-020 protein_coding Homo_sapiens 0 516
ENST00000549110 SLC11A2-017 protein_coding Homo_sapiens 0 418
ENST00000549193 SLC11A2-016 processed_transcript Homo_sapiens 6e-38 161
ENST00000549625 SLC11A2-018 nonsense_mediated_decay Homo_sapiens 2e-38 163
ENST00000550061 SLC11A2-021 retained_intron Homo_sapiens 0 425
ENST00000550714 SLC11A2-011 protein_coding Homo_sapiens 0 505
ENST00000550782 SLC11A2-009 retained_intron Homo_sapiens 0 990
ENST00000550995 SLC11A2-013 processed_transcript Homo_sapiens 0.00000002 64
ENST00000551231 SLC11A2-022 retained_intron Homo_sapiens 0 451

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