C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 28035
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139454 Gm28035-001 ENSMUSG00000099041 10090 + 2:30240567-30282148 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverOvaryPlacentaENSMUST00000139454
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Ovary Placenta
ENSMUST00000139454 7.571±0.00 6.011±2.16 7.015±0.00 4.206±0.08 6.434±0.59 6.799±0.00 5.277±0.00 6.024±0.89 3.483±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BM CIL_0003BM_0002 CGP 2:30240567-30282149

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002329 IMP pre-B cell differentiation
GO:0005253 IEA anion channel activity
GO:0005886 ISS plasma membrane
GO:0006820 ISS anion transport
GO:0006884 ISS cell volume homeostasis
GO:0006970 ISS response to osmotic stress
GO:0009986 IEA cell surface
GO:0016020 IEA membrane
GO:0034702 ISS ion channel complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148138 lrrc8a-001 protein_coding Danio_rerio 0 1487
ENST00000259324 LRRC8A-201 protein_coding Homo_sapiens 0 3646
ENST00000306708 LRRC8E-001 protein_coding Homo_sapiens 5.60519e-45 187
ENST00000372599 LRRC8A-002 protein_coding Homo_sapiens 0 3565
ENST00000372600 LRRC8A-001 protein_coding Homo_sapiens 0 3646
ENST00000492784 LRRC8A-003 processed_transcript Homo_sapiens 0 377
ENST00000618098 LRRC8E-201 protein_coding Homo_sapiens 5.60519e-45 187

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