C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GTPase activating RANGAP domain-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139778 Garnl3-003 ENSMUSG00000038860 10090 - 2:33008928-33105028 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleOvaryENSMUST00000139778
Transcript ID Brain Heart Kidney Liver Muscle Ovary
ENSMUST00000139778 1.667±0.00 0.097±0.00 0.095±0.03 0.029±0.01 0.044±0.01 0.251±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0002 VISTA 2:32608279-33209524

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373386 GARNL3-001 nonsense_mediated_decay Homo_sapiens 0 1871
ENST00000373387 GARNL3-003 protein_coding Homo_sapiens 0 1871
ENST00000425970 GARNL3-012 protein_coding Homo_sapiens 0 527
ENST00000429629 GARNL3-011 nonsense_mediated_decay Homo_sapiens 0 701
ENST00000435213 GARNL3-201 protein_coding Homo_sapiens 0 1871
ENST00000439286 GARNL3-005 protein_coding Homo_sapiens 0 763
ENST00000441134 GARNL3-018 nonsense_mediated_decay Homo_sapiens 0 206
ENST00000453030 GARNL3-017 nonsense_mediated_decay Homo_sapiens 0 556
ENST00000464616 GARNL3-015 processed_transcript Homo_sapiens 0 529
ENST00000478702 GARNL3-019 processed_transcript Homo_sapiens 0 527
ENST00000495172 GARNL3-007 retained_intron Homo_sapiens 0 893
ENST00000498801 GARNL3-020 processed_transcript Homo_sapiens 0 514

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