C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA3 (alpha 3)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139965 Gria3-002 ENSMUSG00000001986 10090 + X:41401436-41678598 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000139965
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000139965 0.517±0.14 4.142±0.02 15.095±0.00 0.671±0.11 0.324±0.19 0.225±0.02 0.947±0.56 0.041±0.02 1.054±0.30 0.071±0.00 1.172±0.59 0.058±0.04 0.108±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U7 CIL_0001U7_0002 CGP X:41400854-41920674

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004971 IBA alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:0005234 IBA extracellular-glutamate-gated ion channel activity
GO:0005515 IPI protein binding
GO:0016020 IDA membrane
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0034220 IBA ion transmembrane transport
GO:0035235 IBA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0045211 IBA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000043180 gria3b-001 protein_coding Danio_rerio 0 1602
ENSDART00000074671 gria2b-002 protein_coding Danio_rerio 0 750
ENSDART00000016916 gria4b-001 protein_coding Danio_rerio 0 675
ENSDART00000102782 gria2a-001 protein_coding Danio_rerio 0 601
ENSDART00000044735 gria1b-001 protein_coding Danio_rerio 0 481
ENSDART00000021437 gria1a-001 protein_coding Danio_rerio 0 475
ENSDART00000134602 gria2b-003 processed_transcript Danio_rerio 0 294
ENSDART00000064617 gria2b-001 protein_coding Danio_rerio 0 294
ENSDART00000049291 gria3a-001 protein_coding Danio_rerio 0 283
ENSDART00000137120 gria3a-002 protein_coding Danio_rerio 0 276
ENSDART00000077805 gria2a-002 protein_coding Danio_rerio 0 267
ENST00000264426 GRIA2-002 protein_coding Homo_sapiens 0 920
ENST00000282499 GRIA4-201 protein_coding Homo_sapiens 0 833
ENST00000285900 GRIA1-001 protein_coding Homo_sapiens 0 699
ENST00000296526 GRIA2-001 protein_coding Homo_sapiens 0 289
ENST00000323661 GRIA2-006 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000393127 GRIA4-202 protein_coding Homo_sapiens 0 946
ENST00000393815 GRIA2-004 protein_coding Homo_sapiens 0 289
ENST00000460123 GRIA3-003 processed_transcript Homo_sapiens 0 821
ENST00000471736 GRIA2-003 retained_intron Homo_sapiens 0 289
ENST00000479118 GRIA3-004 processed_transcript Homo_sapiens 0 758
ENST00000503980 GRIA2-013 retained_intron Homo_sapiens 2.00386e-43 180
ENST00000507898 GRIA2-005 protein_coding Homo_sapiens 0 289
ENST00000510854 GRIA2-012 protein_coding Homo_sapiens 0 289
ENST00000518142 GRIA1-013 protein_coding Homo_sapiens 0 699
ENST00000518783 GRIA1-007 protein_coding Homo_sapiens 0 699
ENST00000521843 GRIA1-010 protein_coding Homo_sapiens 0 699
ENST00000525187 GRIA4-006 protein_coding Homo_sapiens 0 946
ENST00000525942 GRIA4-007 nonsense_mediated_decay Homo_sapiens 0 582
ENST00000530497 GRIA4-005 protein_coding Homo_sapiens 0 833
ENST00000533094 GRIA4-008 processed_transcript Homo_sapiens 7.00649e-45 185
ENST00000541091 GRIA3-002 protein_coding Homo_sapiens 0 3888
ENST00000611689 GRIA3-006 protein_coding Homo_sapiens 0 625
ENST00000616590 GRIA3-007 protein_coding Homo_sapiens 0 473
ENST00000620443 GRIA3-001 protein_coding Homo_sapiens 0 3747
ENST00000620581 GRIA3-201 protein_coding Homo_sapiens 0 4656
ENST00000622768 GRIA3-202 protein_coding Homo_sapiens 0 3984

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