C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDK5 regulatory subunit associated protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140108 Cdk5rap2-002 ENSMUSG00000039298 10090 - 4:70249009-70254736 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverENSMUST00000140108
Transcript ID Brain Liver
ENSMUST00000140108 55.000±0.00 24.483±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FK CIL_0004FK_0002 CGP 4:68761514-70410443
CIL_0004FL CIL_0004FL_0002 CGP 4:70216856-70534995

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000238081 YWHAQ-001 protein_coding Homo_sapiens 0 597
ENST00000349780 CDK5RAP2-005 protein_coding Homo_sapiens 0 209
ENST00000360190 CDK5RAP2-014 protein_coding Homo_sapiens 0 209
ENST00000360822 CDK5RAP2-201 protein_coding Homo_sapiens 0 209
ENST00000381844 YWHAQ-002 protein_coding Homo_sapiens 0 597
ENST00000416449 CDK5RAP2-008 protein_coding Homo_sapiens 0 209
ENST00000425647 CDK5RAP2-013 protein_coding Homo_sapiens 0 209
ENST00000446619 YWHAQ-005 protein_coding Homo_sapiens 0 597
ENST00000473282 CDK5RAP2-012 nonsense_mediated_decay Homo_sapiens 0 209
ENST00000474715 YWHAQ-004 processed_transcript Homo_sapiens 6e-29 132
ENST00000480112 CDK5RAP2-016 nonsense_mediated_decay Homo_sapiens 0 209
ENST00000483412 CDK5RAP2-015 retained_intron Homo_sapiens 0 209
ENST00000490943 GHc-210E9.2-001 processed_pseudogene Homo_sapiens 0 274
ENST00000556917 RP11-74M13.4-001 transcribed_processed_pseudogene Homo_sapiens 0 342
ENST00000557452 RP11-74M13.4-002 processed_transcript Homo_sapiens 0 377
ENST00000603536 YWHAQP7-001 processed_pseudogene Homo_sapiens 3e-36 156

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