C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: early B cell factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140169 Ebf4-005 ENSMUSG00000053552 10090 + 2:130295939-130370481 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000140169
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000140169 1.148±1.01 0.889±0.22 0.462±0.00 2.012±0.88 0.185±0.00 0.210±0.05 0.153±0.03 0.075±0.05 0.285±0.01 0.138±0.07 3.134±0.61 0.358±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_0000FY CIL_0000FY_0002 CGP 2:130279309-130370481
CIL_0000FX CIL_0000FX_0002 CGP 2:130295169-130397574

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IMP RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0008134 IPI transcription factor binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000100508 ebf1b-201 protein_coding Danio_rerio 0 516
ENSDART00000136729 ebf1b-001 protein_coding Danio_rerio 0 340
ENST00000342725 EBF4-009 protein_coding Homo_sapiens 0 1977
ENST00000380648 EBF4-201 protein_coding Homo_sapiens 0 1973
ENST00000449079 EBF4-002 nonsense_mediated_decay Homo_sapiens 0 2257
ENST00000463145 EBF4-006 protein_coding Homo_sapiens 0 494
ENST00000469215 EBF4-005 processed_transcript Homo_sapiens 0 651
ENST00000491472 EBF4-007 processed_transcript Homo_sapiens 0 375
ENST00000497450 EBF4-004 processed_transcript Homo_sapiens 0 555
ENST00000609451 EBF4-011 protein_coding Homo_sapiens 0 2034
ENST00000609967 EBF4-010 retained_intron Homo_sapiens 0 1666

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