C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Son DNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140312 Son-005 ENSMUSG00000022961 10090 + 16:91647879-91679195 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000140312
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000140312 18.828±3.87 16.345±1.27 25.446±8.94 12.300±2.33 12.775±0.93 10.497±1.97 7.508±3.06 33.340±3.28 22.670±4.29 8.448±0.00 18.205±1.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000466 CIL_000466_0002 CGP 16:91621186-91679221
CIL_00037O CIL_00037O_0002 CGP 16:91647506-91688765

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0050733 IPI RS domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300278 SON-003 protein_coding Homo_sapiens 0 5299
ENST00000303113 DONSON-008 protein_coding Homo_sapiens 8e-22 110
ENST00000356577 SON-001 protein_coding Homo_sapiens 0 5299
ENST00000381679 SON-006 protein_coding Homo_sapiens 0 5297
ENST00000381692 SON-002 protein_coding Homo_sapiens 0 1454
ENST00000421541 SON-008 protein_coding Homo_sapiens 0 1284
ENST00000429093 SON-023 nonsense_mediated_decay Homo_sapiens 0 279
ENST00000435919 RP11-367J7.4-001 processed_pseudogene Homo_sapiens 0 763
ENST00000436227 SON-007 protein_coding Homo_sapiens 0 2815
ENST00000455528 SON-004 nonsense_mediated_decay Homo_sapiens 0 5299
ENST00000457208 SON-013 nonsense_mediated_decay Homo_sapiens 0 941
ENST00000465834 SON-014 retained_intron Homo_sapiens 0 763
ENST00000467616 SON-019 processed_transcript Homo_sapiens 0 787
ENST00000470533 SON-022 processed_transcript Homo_sapiens 0 1245
ENST00000473102 SON-018 processed_transcript Homo_sapiens 0 699
ENST00000475072 SON-010 retained_intron Homo_sapiens 0 379
ENST00000477419 SON-015 retained_intron Homo_sapiens 0 556
ENST00000478183 SON-009 retained_intron Homo_sapiens 0 2119
ENST00000484294 SON-017 processed_transcript Homo_sapiens 0 719
ENST00000491794 SON-016 retained_intron Homo_sapiens 0 1452
ENST00000492229 SON-011 processed_transcript Homo_sapiens 0 374

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