C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140485 Raph1-001 ENSMUSG00000026014 10090 - 1:60482292-60566779 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000140485
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000140485 2.729±0.24 3.248±1.58 2.291±0.62 6.018±3.49 1.227±0.45 4.182±0.87 1.969±0.95 1.269±0.48 2.901±1.44 6.652±0.95 0.376±0.07 1.343±0.48 3.111±1.81 0.434±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JQ CIL_0000JQ_0003 CGP 1:60409619-60567104
CIL_0001QX CIL_0001QX_0002 CGP 1:60482292-60773359

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007165 IEA signal transduction
GO:0031252 IDA cell leading edge
GO:0048675 IMP axon extension

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295851 ABI2-001 protein_coding Homo_sapiens 0 2150
ENST00000308091 RAPH1-002 protein_coding Homo_sapiens 0 1439
ENST00000319170 RAPH1-001 protein_coding Homo_sapiens 0 4564
ENST00000374493 RAPH1-017 protein_coding Homo_sapiens 0 3363
ENST00000418114 RAPH1-014 protein_coding Homo_sapiens 0 2320
ENST00000419464 RAPH1-013 protein_coding Homo_sapiens 0 2318
ENST00000420371 RAPH1-009 protein_coding Homo_sapiens 0 484
ENST00000423104 RAPH1-015 protein_coding Homo_sapiens 0 1435
ENST00000428637 RAPH1-007 protein_coding Homo_sapiens 0 660
ENST00000439222 RAPH1-011 protein_coding Homo_sapiens 0 1439
ENST00000453034 RAPH1-004 protein_coding Homo_sapiens 0 1441
ENST00000457812 RAPH1-005 protein_coding Homo_sapiens 0 2401

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