C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9, pseudogene 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140507 Rpl9-ps7-001 ENSMUSG00000047965 10090 + 2:70458982-70459560 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000140507
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000140507 4.143±0.50 4.763±0.64 1.178±0.71 1.203±0.72 0.516±0.25 0.635±0.40 0.530±0.26 3.853±4.13 0.672±0.24 1.106±0.48 2.063±1.71 1.933±1.81 0.349±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004SG CIL_0004SG_0002 CGP 2:70039126-70477729
CIL_0007J4 CIL_0007J4_0002 UCNEbase 2:70317822-70475113

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295955 RPL9-001 protein_coding Homo_sapiens 0 741
ENST00000330965 RPL9P7-001 processed_pseudogene Homo_sapiens 0 741
ENST00000392269 RP11-256K7.1-001 processed_pseudogene Homo_sapiens 0 505
ENST00000393394 RPL9-201 protein_coding Homo_sapiens 0 747
ENST00000418824 UBE2Q2P6-002 processed_transcript Homo_sapiens 0 508
ENST00000420684 AC009500.2-001 processed_pseudogene Homo_sapiens 0 276
ENST00000423843 AC093698.1-001 processed_pseudogene Homo_sapiens 0 597
ENST00000424673 RPL9P2-001 processed_pseudogene Homo_sapiens 0 451
ENST00000437992 RPL9-010 retained_intron Homo_sapiens 0 438
ENST00000449470 RPL9-002 protein_coding Homo_sapiens 0 741
ENST00000461606 RPL9P28-001 processed_pseudogene Homo_sapiens 0 625
ENST00000463864 CTD-2290C23.1-001 processed_pseudogene Homo_sapiens 0 625
ENST00000464118 RPL9P32-001 processed_pseudogene Homo_sapiens 0 662
ENST00000466501 UBE2Q2P6-001 transcribed_processed_pseudogene Homo_sapiens 0 747
ENST00000472460 RP11-851M3.1-001 processed_pseudogene Homo_sapiens 0 497
ENST00000474761 CTD-2377D24.2-001 processed_pseudogene Homo_sapiens 1e-38 161
ENST00000489027 RP11-64K12.1-001 processed_pseudogene Homo_sapiens 0 580
ENST00000489563 RPL9P25-001 processed_pseudogene Homo_sapiens 0 673
ENST00000491923 RPL9P16-001 processed_pseudogene Homo_sapiens 0 429
ENST00000495117 RPL9P31-001 processed_pseudogene Homo_sapiens 0 416
ENST00000503040 RPL9-011 protein_coding Homo_sapiens 0 649
ENST00000503277 RPL9-008 retained_intron Homo_sapiens 0 675
ENST00000504470 RPL9-009 protein_coding Homo_sapiens 0 643
ENST00000506581 RPL9-012 protein_coding Homo_sapiens 0 243
ENST00000508595 RPL9-007 protein_coding Homo_sapiens 0 675
ENST00000511075 RPL9-006 retained_intron Homo_sapiens 0 505
ENST00000511084 CTB-85P21.1-001 processed_pseudogene Homo_sapiens 0 198
ENST00000511643 RPL9-013 retained_intron Homo_sapiens 0 244
ENST00000514842 RPL9-005 retained_intron Homo_sapiens 0 427
ENST00000561773 TIPIN-006 processed_transcript Homo_sapiens 0 673

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