C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA 3'-terminal phosphate cyclase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140677 Rtca-003 ENSMUSG00000000339 10090 - 3:116494151-116508024 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMusclePlacentaTestisENSMUST00000140677
Transcript ID Brain Heart Liver Muscle Placenta Testis
ENSMUST00000140677 10.067±0.00 2.390±0.36 1.456±0.00 3.125±0.39 6.369±0.00 20.947±2.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ER CIL_0007ER_0002 CGP 3:116272553-116508208
CIL_0007ES CIL_0007ES_0002 CGP 3:116488963-116549976

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0006396 IEA RNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260563 RTCA-002 protein_coding Homo_sapiens 0 798
ENST00000370128 RTCA-001 protein_coding Homo_sapiens 0 822
ENST00000483474 RTCA-004 processed_transcript Homo_sapiens 0 372
ENST00000498617 RTCA-005 processed_transcript Homo_sapiens 0 425

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