C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinol dehydrogenase 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140823 Rdh12-004 ENSMUSG00000021123 10090 + 12:79210661-79212755 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonMuscleOvaryTestisENSMUST00000140823
Transcript ID Colon Muscle Ovary Testis
ENSMUST00000140823 0.515±0.00 0.172±0.00 0.271±0.00 0.159±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CM CIL_0002CM_0002 CGP 12:79174337-79222665
CIL_00083I CIL_00083I_0002 VISTA 12:79205602-79809359
CIL_0001JS CIL_0001JS_0003 CGP 12:79208914-79296282

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016491 IEA oxidoreductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000381346 RDH11-001 protein_coding Homo_sapiens 0 237
ENST00000428130 RDH11-004 protein_coding Homo_sapiens 0 237
ENST00000553384 RDH11-003 protein_coding Homo_sapiens 1e-39 169
ENST00000553578 RDH11-006 retained_intron Homo_sapiens 9e-24 117
ENST00000553816 RDH11-012 retained_intron Homo_sapiens 0 237
ENST00000554035 RDH11-013 protein_coding Homo_sapiens 2e-29 134
ENST00000557331 RDH11-008 nonsense_mediated_decay Homo_sapiens 3e-40 169
ENST00000557726 RDH11-010 protein_coding Homo_sapiens 2e-23 113

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