C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trinucleotide repeat containing 6C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141115 Tnrc6c-004 ENSMUSG00000025571 10090 + 11:117654573-117763428 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverLungMuscleOvaryPlacentaENSMUST00000141115
Transcript ID Bladder Brain Liver Lung Muscle Ovary Placenta
ENSMUST00000141115 0.564±0.00 2.474±0.42 0.271±0.07 0.704±0.00 0.416±0.00 0.906±0.00 0.312±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_00009V CIL_00009V_0002 CGP 11:117654289-117782198

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000113726 TNRC6C (2 of 3)-201 protein_coding Danio_rerio 0 414
ENSDART00000151634 TNRC6C (2 of 3)-001 protein_coding Danio_rerio 0 414
ENST00000301624 TNRC6C-201 protein_coding Homo_sapiens 0 5565
ENST00000335749 TNRC6C-202 protein_coding Homo_sapiens 0 5605
ENST00000585438 TNRC6C-007 protein_coding Homo_sapiens 0 416
ENST00000587990 TNRC6C-009 retained_intron Homo_sapiens 0 651
ENST00000588061 TNRC6C-002 protein_coding Homo_sapiens 0 5524
ENST00000588549 TNRC6C-004 protein_coding Homo_sapiens 0 621
ENST00000588847 TNRC6C-001 protein_coding Homo_sapiens 0 5565
ENST00000591851 TNRC6C-003 retained_intron Homo_sapiens 0 1386
ENST00000592251 TNRC6C-008 retained_intron Homo_sapiens 0 536
ENST00000592566 TNRC6C-006 retained_intron Homo_sapiens 0 339

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