C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141135 Abca4-004 ENSMUSG00000028125 10090 + 3:122132003-122180061 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000141135
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000141135 0.695±0.03 0.227±0.14 0.202±0.04 0.284±0.05 0.225±0.06 0.115±0.05 0.782±0.23 2.165±0.61 0.118±0.08 2.408±0.32 0.425±0.13 1.918±0.70 1.088±0.50 0.115±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DI CIL_0009DI_0002 VISTA 3:121653542-122254391
CIL_0009DJ CIL_0009DJ_0002 VISTA 3:121747471-122349247
CIL_0005PB CIL_0005PB_0003 CGP 3:121953229-122180061
CIL_0009DH CIL_0009DH_0002 VISTA 3:121992915-122594267

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370225 ABCA4-001 protein_coding Homo_sapiens 0 3459
ENST00000460514 ABCA4-004 processed_transcript Homo_sapiens 0 797
ENST00000465352 ABCA4-002 processed_transcript Homo_sapiens 0 743
ENST00000470771 ABCA4-005 processed_transcript Homo_sapiens 0 370
ENST00000484388 ABCA4-006 processed_transcript Homo_sapiens 0 318
ENST00000536513 ABCA4-201 protein_coding Homo_sapiens 0 3459

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