C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000141415  |
Cops3-003 |
ENSMUSG00000019373 |
10090 | - |
11:59833091-59839752  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0009A0 | CIL_0009A0_0002 | VISTA | 11:59693037-60296757 |
| CIL_00040N | CIL_00040N_0002 | CGP | 11:59791408-59839838 |
| CIL_0000NX | CIL_0000NX_0002 | CGP | 11:59817795-59880968 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0001701 | IMP | in utero embryonic development |
| GO:0005515 | IPI | protein binding |
| GO:0008180 | IDA | COP9 signalosome |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000268717
|
COPS3-001 | protein_coding | Homo_sapiens | 0 | 300 |
|
ENST00000417352
|
COPS3-008 | protein_coding | Homo_sapiens | 0 | 300 |
|
ENST00000462236
|
COPS3-003 | retained_intron | Homo_sapiens | 0 | 235 |
|
ENST00000477299
|
COPS3-006 | nonsense_mediated_decay | Homo_sapiens | 0 | 300 |
|
ENST00000492672
|
COPS3-007 | nonsense_mediated_decay | Homo_sapiens | 0 | 211 |
|
ENST00000505334
|
RP11-91J3.1-001 | processed_pseudogene | Homo_sapiens | 1e-27 | 128 |
|
ENST00000577210
|
COPS3-019 | nonsense_mediated_decay | Homo_sapiens | 6e-19 | 99 |
|
ENST00000577246
|
COPS3-015 | nonsense_mediated_decay | Homo_sapiens | 1e-25 | 121 |
|
ENST00000578317
|
COPS3-013 | nonsense_mediated_decay | Homo_sapiens | 0 | 196 |
|
ENST00000584216
|
COPS3-016 | nonsense_mediated_decay | Homo_sapiens | 0 | 300 |
