C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142890 Tspan5-002 ENSMUSG00000028152 10090 + 3:138742305-138904426 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000142890
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000142890 1.713±0.14 15.429±5.09 6.174±0.00 7.394±2.67 1.843±0.05 1.143±0.00 0.538±0.05 2.891±0.39 0.283±0.11 3.113±1.04 0.478±0.09 2.718±0.52 0.430±0.09 1.799±0.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LO CIL_0008LO_0002 VISTA 3:138442669-139045155

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000305798 TSPAN5-001 protein_coding Homo_sapiens 0 756
ENST00000505184 TSPAN5-004 protein_coding Homo_sapiens 0 499
ENST00000507167 TSPAN5-010 retained_intron Homo_sapiens 0 503
ENST00000508798 TSPAN5-002 nonsense_mediated_decay Homo_sapiens 0 1214
ENST00000509168 TSPAN5-007 processed_transcript Homo_sapiens 0 501
ENST00000511651 TSPAN5-005 protein_coding Homo_sapiens 0 435
ENST00000511753 TSPAN5-003 retained_intron Homo_sapiens 0 459
ENST00000511800 TSPAN5-008 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000515287 TSPAN5-006 protein_coding Homo_sapiens 0 501
ENST00000515440 TSPAN5-009 nonsense_mediated_decay Homo_sapiens 0 359

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