C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142984 Hdac1-005 ENSMUSG00000028800 10090 - 4:129518083-129522790 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverLungOvaryENSMUST00000142984
Transcript ID Adrenal Breast Colon Liver Lung Ovary
ENSMUST00000142984 4.894±0.55 10.873±1.43 11.291±1.95 3.158±0.00 7.090±0.00 7.868±1.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0002 VISTA 4:129413466-130014337
CIL_0002A7 CIL_0002A7_0002 CGP 4:129513581-129542713

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373548 HDAC1-001 protein_coding Homo_sapiens 0 676
ENST00000428704 HDAC1-010 protein_coding Homo_sapiens 0 292
ENST00000455482 HDAC1P1-001 processed_pseudogene Homo_sapiens 0 496
ENST00000463172 HDAC1-003 processed_transcript Homo_sapiens 0 300
ENST00000472928 HDAC1-005 processed_transcript Homo_sapiens 0 207
ENST00000476391 HDAC1-002 retained_intron Homo_sapiens 0 370
ENST00000481281 HDAC1-006 processed_transcript Homo_sapiens 0 204
ENST00000482310 HDAC1-007 processed_transcript Homo_sapiens 0 678
ENST00000490081 HDAC1-004 processed_transcript Homo_sapiens 0 1092

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